How to use

This is the web-application version of SingleCellNet. To run SingleCellNet locally through R, visit our Github. To use the singleCellNet webapp, first upload the single-cell RNA-seq expression profiles or Seurat object in the sidebar on the left.

Optionally, you can upload a sample table with cluster assignment, UMAP coordinates to aid with analysis. The uploading format can be ".rda" (preferred) or ".csv/txt". If you upload Seurat object, there is no need to reupload sample table, the sample table would be automatically extracted.

After the upload of single-cell RNA-seq expression profiles, you can follow the flow charts.