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Transcriptional atlas of synovial joint development

The sequencing data, count matricies, and h5ad files with embeddings and cluster assignments, are available at GSE151985

The files listed below are in the loom format. Please see the documentation for using loom files with R at Github. Note that these files contain the UMAP and PCA embeddings, cluster assignments, timepoints, and normalized expression of variable genes. These are the data on this web app, and they correspond to figures from the manuscript as follows:

  1. All cells passing QC. Supplemental Figure 2A. Number of cells: 9,829. Genes: 4,000. adata2_070520.loom
  2. All Gdf5-lineage enriched cells. Figure 2A. Number of cells: 7,329. Genes: 2,105. adata1_070520.loom
  3. Supercluster 1 (SC1) cells. Figure 3A. Number of cells: 2,686. Genes: 2,085 . adata3_070520.loom
  4. SC1_B cells. Figure 4A. Number of cells: 895. Genes: 2,403. adata4_070520.loom
  5. SC2 cells. Figure 5A. Number of cells: 1,122. Genes: 2,984. adata5_070520.loom
  6. SC3 cells. Figure 6A. Number of cells: 3,521. Genes: 2,296. adata6_070520.loom
Data is reported in

A single cell transcriptional atlas of early synovial joint development.
Bian Q, Cheng YH, Wilson JP, Su EY, Kim DQ, Yoo S, Blackshaw S, Cahan P
Development. 2020 June 20:dev.185777